>hg13_knownGene_L22214 range=chr1:198489056-198489555 5'pad=0 3'pad=0 revComp=FALSE strand=+ repeatMasking=none >NM_000674 human gtcacagccctctggccttcagcatcttctagtccctgctgattttgcag gtgggctgacctgggctgccatggtgcttggctaaaatcaaagcaatttt tccattctggattctcatgtgcttgggaatagaggagcaagaaggagaag ggtctggaagggtgggggcctctggctgctccaaacaggtctcaccatat attttcctaggctgggtctctgggtattattgatgaggatgaggtcgggg gtgggggggggtgggggggggtggcaaatgcttgtgcatttcaataggac atagatgcataaaaattacatgcaaatcagcattgattatttgtggggca gtagctttgcagcaagatgagaacagatcacagaatcacagaaagtcaga gctgcaaggcagtctagaatccactagtccaccttcttcctccacatatg gggaaatggaggcccagagaagggaagtgacttgcccaagcgtacagagg >AK095060 human mRNA gttaagagga gggggtgggg gaggagacgg aggatgagga gggaggggct 198526573 ggcgggtgcc gccgccgccc ccgccccctc ccggtgtgcg gagcccgatt 198526623 >L22214 human mRNA >upstream exon 3 tccttatctg caaaatagaa attgctaata gactaaaagg caattctgaa 198526155 agatggatga gaaaggaata taatgactca gggtagagcc tgcaaaacaa 198526205 tatgggatga gaagatgcag ggactggttt catggagaga gcagggtttt 198526255 aggattgggg gagggtgcca gggctaccga ctgctttggg agatcccaga 198526305 gggggcattc tgaagtcctg cagaagagat gctgtgccgt gaggggtgag 198526355 gggtcgctgg aggccagacc agggctccca ggagtcctgc attgagaagg 198526405 gagagagtgg acacaggaag gatgcgcctc tgtccagtcc tgaggctggg 198526455 cgcacacacc aggcccttcg aaaagctcac attttttcca gcttttctca 198526505 cccagtatca cttcctttgt taagaggagg gggtggggga ggagacggag 198526555 gatgaggagg gaggggctgg cgggtgccgc cgccgccccc gccccctccc 198526605 ggtgtgcgga gcccgattgt cactcagctc ctgcgccggg ggcgacagag 198526655 ccgcaggcgc ccgagtcgag tcccagccag ctaccatccc tctggagctt 198526705 accggccggc cttggcttcc ccag >upstream exon 4 ggtgtgcgga gcccgattgt cactcagctc ctgcgccggg ggcgacagag 198526655 ccgcaggcgc ccgagtcgag tcccagccag ctaccatccc tctggagctt 198526705 accggccggc cttggcttcc ccagGAATCC CTGGAGCTAG CGGCTGCTGA 198526755 AGGCGTCGAG GTGTGGGGGC ACTTGGACAG AACAGTCAGG CAGCCGGGAG 198526805 CTCTGCCAGC TTTGGTGACC TTGGgtaagt ctgagtctcg gttcacccct 198526855 ggggctcccc aatgggggtg caggagaggg ttgaaagaag agaccggaat 198526905 gcccccttgg ggcaggccat gggcaaggtt ccccgacaga gctggaacgg 198526955 gaccagagga ctgctaagat ccaggcacca gacgggtctc aagtgggtgg 198527005 gcgcagggca ggtgcgggca cgctggggaa tagggagaaa cgccccagcc 198527055 ttgtcctggg ctccgtcccc agacccacgt ctgccacccc agtcccaggt 198527105 gcgaaacagg ggcgctacct ctttaaaagc gtccggggct gagtctctgc 198527155 cgtaccatgt gattgcttga aag >upstream exon 5 cgtaccatgt gattgcttga aagGCCGGGC TGGGAGCGCT GCGGCGGGAG 198527205 CCGGAGGACT ATGAGCTGCC GCGCGTTGTC CAGAGCCCAG CCCAGCCCTA 198527255 CcGCGCGCGG CCCGGAGCTC TGTTCCCTGG AACTTTGGGC ACTGCCTCTG 198527305 GGACCCCTGC CGGCCAGCAG GCAGGATGgt gagctccctg catcctgttc 198527355 tgtgcacagg ggtgggcaga gccagtcatg ggagacccct ctgtgcgtgt 198527405 gtctgtgtgt gcgcgcgcgc tgggagctgc ctcacacctg ataaaaaagc 198527455 cagtggagga gtgagcgctg ctattttaag ttgctgaatg gaacctctgg 198527505 gaatgataaa gggaagggac aaagattagg cagagaaggg tccgggtgcc 198527555 cctccagcct gggtaggagc tgcatgtgac aagtgggaca catcacaggg 198527605 tacctggagt tccagggcag cctgagctcc ctgcccctcc cagacgggtc 198527655 tccccatccc aggcttccct gaccacacag >rn1_knownGene_M64299 range=chr13:41279007-41279506 5'pad=0 3'pad=0 revComp=TRUE strand=- repeatMasking=none >AF042079 rat, upstream exon 5 atcccccacttggggcagtcaatgggcaaggattctgggcagagctgaag cgggaccaggctactgttaagattcgggcaccggcggcgtcccaggtggg tgggcacagggtaggcgtgcgcgcacgcggggaatgggagcccgtggacc cggcaggtcctgggcttagtccctcagaatcacgcctgccatccagtccc aggtatgaaacaggggcactacctctttaaacgcgtccggggctgagcct ctgccacaccatgtgattgcttgaaaggccgggctgggagcgcagcggcg ggagcctggagaacgatgagccgatgcgcgcgcggtgcccagagcccagc cctgcccggcgcggctccggaaagccgcccagggaacttagggcaacgcc tttgggaccccctactggttggtaggcaggatggtgagctccttgcctct gggtagcggacacctgtgggccgcgtggatgcacaggggatccttgtgga >rn1_knownGene_M64299 range=chr13:41279007-41279506 5'pad=0 3'pad=0 revComp=TRUE strand=- repeatMasking=none >AB001089 rat, upstream exon 5 atcccccacttggggcagtcaatgggcaaggattctgggcagagctgaag cgggaccaggctactgttaagattcgggcaccggcggcgtcccaggtggg tgggcacagggtaggcgtgcgcgcacgcggggaatgggagcccgtggacc cggcaggtcctgggcttagtccctcagaatcacgcctgccatccagtccc aggtatgaaacaggggcactacctctttaaacgcgtccggggctgagcct ctgccacaccatgtgattgcttgaaaggccgggctgggagcgcagcggcg ggagcctggagaacgatgagccgatgcgcgcgcggtgcccagagcccagc cctgcccggcgcggctccggaaagccgcccagggaacttagggcaacgcc tttgggaccccctactggttggtaggcaggatggtgagctccttgcctct gggtagcggacacctgtgggccgcgtggatgcacaggggatccttgtgga >Y12519 rat, upstream exon 4 >rn1_refGene_NM_017155 range=chr13:41279108-41279607 5'pad=0 3'pad=0 revComp=TRUE strand=- repeatMasking=none gtggccaggagctctgccagctttggtgtgaccttgggtaagtctgtggc tcagttcgtgcaccacgaatgtgcaggaaaggggtggatgaaacgactgg gatcccccacttggggcagtcaatgggcaaggattctgggcagagctgaa gcgggaccaggctactgttaagattcgggcaccggcggcgtcccaggtgg gtgggcacagggtaggcgtgcgcgcacgcggggaatgggagcccgtggac ccggcaggtcctgggcttagtccctcagaatcacgcctgccatccagtcc caggtatgaaacaggggcactacctctttaaacgcgtccggggctgagcc tctgccacaccatgtgattgcttgaaaggccgggctgggagcgcagcggc gggagcctggagaacgatgagccgatgcgcgcgcggtgcccagagcccag ccctgcccggcgcggctccggaaagccgcccagggaacttagggcaacgc >rat, potential upstream exon 3? >rn1_refGene_NM_017155 range=chr13:41244391-41280107 5'pad=0 3'pad=0 revComp=TRUE strand=- repeatMasking=none atgtattcgtcgaacatcgtcttatatttgaacaaatgtacgtgaatgcc ccctaagttatatactaataaatgagtctttgggctgtatgtcgtatgta cccttaggttttctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn ncctccctctccggtgtgcggagcccgattgtcactcagctcccgcgccg ggggcgacgaaggcgcgggcgccagagtggagtctcggctggctaccacc ccctggacctaactgggtaaccctgggttcccctggcatcctctgagtga gcgactgcccaaggtttcgaggtctagggatacttggctagactgttcag gtggccaggagctctgccagctttggtgtgaccttgggtaagtctgtggc tcagttcgtgcaccacgaatgtgcaggaaaggggtggatgaaacgactgg gatcccccacttggggcagtcaatgggcaaggattctgggcagagctgaa gcgggaccaggctactgttaagattcgggcaccggcggcgtcccaggtgg gtgggcacagggtaggcgtgcgcgcacgcggggaatgggagcccgtggac ccggcaggtcctgggcttagtccctcagaatcacgcctgccatccagtcc caggtatgaaacaggggcactacctctttaaacgcgtccggggctgagcc tctgccacaccatgtgattgcttgaaaggccgggctgggagcgcagcggc gggagcctggagaacgatgagccgatgcgcgcgcggtgcccagagcccag ccctgcccggcgcggctccggaaagccgcccagggaacttagggcaacgc >BC026602 mouse, upstream 5 gagcctggagaacgatgagccgatgcgcgcgcggtgcccagaacccaacc ctgcccggcgcggctccggaaagccgcccggggaacttagggcaacgcct ttgggacccc ctaccggttg gcaggcagga tggtgagctc cttgcctccg 135102941 ggtcggcgga cacctgtggg cactgtggat tcacagggga tccttgtgga 135102891 GTAAGTGTAC AGGGAGCCAC CTCACACCTG ATACAAAAAC CAGTGGTGGA 135102841 GTGAGTGCTG CTATTTTAAG TTGCTGAATG GAACCTCTAA GGACAAGGGG 135102791 AGGGGACAGA GGTTAAGCAG ATAGTGAGCC TGAGTGTCTG GCCAGCTTGG 135102741 GCAGGCACTG CATCACTTTA CTGGGGCACA TCTTCGCAGG GCTGCCTATG 135102691 TCCCCCTCCT TCCCAGGCTG GCATCCCCAC CGCAGGCTTC CTGACCACAG 135102641 GTGCTGGCCT CGCGCCCCAG GGCGCCTGTC TGCTGATGTG CCCAGCTCCT 135102591 GCCCACCATG CCGCCGTACA TCTCGGCCTT CCAGGcTGCC TACATTGGCA 135102541 TCGA >mm2_knownGene_U05671 range=chr1:135102891-135103390 5'pad=0 3'pad=0 revComp=TRUE strand=- repeatMasking=none >U05671 mouse, upstream exon 4 tgtcccccttggggcagtcgatgggtaaggattctgggcagagctggagc tggaccaggcttctgttaagaatcgggcaccagcggcgtcccaggtgggt gggcacagggtaggcgtgcgcgcacgcggggaatgggagccggtggaccc gccaggtcctgggcttagtccctcagaatcacgcctgccatccagtccca ggtacgaaacaggggcactacctctttaaaggcgtccggggctgagcctc tgccacaccatgtgattgcttgaaaggccgggctgggagcgcagcggcgg gagcctggagaacgatgagccgatgcgcgcgcggtgcccagaacccaacc ctgcccggcgcggctccggaaagccgcccggggaacttagggcaacgcct ttgggaccccctaccggttggcaggcaggatggtgagctccttgcctccg ggtcggcggacacctgtgggcactgtggattcacaggggatccttgtgga >mouse, potential exon 3? nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnggaacggaggactgcctgcattctaag ccagcactttactatctattggactaaacccaacaaggctcagacgaggt ttttagtttggttgaggcagggtctcattatgtagctcaggctggccgga aactcaaggtataacccaggctggtcttgaactcctgaacctcctgccta tgccttcttagagctgagaaaacaggcatgtactgtcatgcctagcttca gaggagaatcttaagacctcttctgttctctaggaatggacccaaacctt gacacccagccattctctcctcattggggctcaaaggggtgggcaggctc ctggggagtttggggacaatgtggaggcctctggaaaggtgaaggctcag gactgctgaacagggctaccccagtgtgtttccacctctgtcctctcttc cacattcctcaggcccactgtggagaactaagggtaccagcagagaaatc agagacaggggtcttggaaggcaaaagacaaggctgagaggaaattgtgc agagagcaggccttggggtcttttcatttcctgtgacatcattttgcctc agagtcacatgcttagtaaaaagcttttcttttgggtacctttaagagcg ctcaagcctggtacctgtgggatttggtcccaacatagctccactatcag cacggggcagatttcagcattttgaactttggactctcctttcctcccct tctccccattggcctggcactgcctgcttttttttttttttttaagtcta >cttcagtgtgttagtctttggcaagttcctttcatttcccagcctgaatc tttttctggagcacaagggattggactagatactgtgtagtcttaggtgc tggggcagaaaggagaaggagaaggaggaggagggggaggggaaggagca tagtagtgtaacactgacagtgggggtcatttctctgagcctcagcatcc tcatctgcaaaatggaaattacgaagagcctgaaaagcactctgagcgat ggatgagaaagggctatgactcaggagactgcctgcaaagtaacgtgtgt gcgggaagcctgtgcgctcctgacagtgctgggactgctttcctgaagag agtaggttttaagattaggggaggcgcccagatgccaatggttggtggcg gtgggagaccagagaggggccctcttgagtcccgcaggtgattagggctt gggctgtccgcctgctgcattgagaagggagggagggagtaagggaaaga gggaacacgggaatcggcacctcggtactgtccctgtcccgaggccggat ccatacatcacaccattcgagacgctcacgttttcccagcttttctcaca ctgaatcacttcctttgtttagaggagggggtaggggaggagacggaggg cgacgagggaggggcccgcgggtgccgccgccgcccccgcccccgccccc tccccctcccggtgtgcggagcccgattgtcactcagctcccgcgccggg ggcgacgaaggcgccggcgccagagtggagtctcggctggctaccacccc ttggacataactggctagccctgggttcccctggcatcctctgagggagc gactgcccaaggttttgaggtctggggatacttggctagacagttcaggt ggccaggcgctctgccagctttggtgtgaccttgggtaagtctgtggctc agttcgtgcatcatgagtgtgcaggaaaggggtggatgaaatgactgggg tgtcccccttggggcagtcgatgggtaaggattctgggcagagctggagc tggaccaggcttctgttaagaatcgggcaccagcggcgtcccaggtgggt gggcacagggtaggcgtgcgcgcacgcggggaatgggagccggtggaccc gccaggtcctgggcttagtccctcagaatcacgcctgccatccagtccca ggtacgaaacaggggcactacctctttaaaggcgtccggggctgagcctc tgccacaccatgtgattgcttgaaaggccgggctgggagcgcagcggcgg gagcctggagaacgatgagccgatgcgcgcgcggtgcccagaacccaacc ctgcccggcgcggctccggaaagccgcccggggaacttagggcaacgcct ttgggaccccctaccggttggcaggcaggatggtgagctccttgcctccg ggtcggcggacacctgtgggcactgtggattcacaggggatccttgtgga