human_upstream_4 For sequence /tmp/temp.seq1049984908, length 574 : Site (Length) Position Score (Gaps) Occurrence Exp Value NF-kB-TNF-alpha'(11) 250 8 ( 0) 1 9.13e-03 NFkB_CS2(11) 250 8 ( 0) 1 2.91e-01 NFkB_CS1(10) 251 10 ( 0) 1 7.47e-02 NFkB_CS4(9) 251 8 ( 0) 1 1.29e-01 enhancer_core_((10) 251 10 ( 0) 1 7.55e-306 AP-2_CS5'(8) 252 8 ( 0) 3 2.42e-01 AP-2-TBXAS1'(6) 256 6 ( 0) 2 2.43e-01 GKLF-RS(7) 265 7 ( 0) 2 6.71e-01 GKLF_CS(7) 265 7 ( 0) 2 6.71e-01 MRE_CS2'(7) 266 6 ( 0) 2 4.26e-01 NRE_Box1_CS'(9) 273 8 ( 0) 1 3.39e-02 NF-kB-MMP-9(11) 296 8 ( 0) 1 9.13e-03 NF-kappaB-TNF-a'(11) 296 8 ( 0) 1 9.13e-03 NFkB_CS2'(11) 296 8 ( 0) 1 2.91e-01 AP-2_CS6'(8) 304 7 ( 0) 3 6.70e-01 CAC-binding-PBG'(7) 309 7 ( 0) 1 6.70e-02 AP-2_CS5'(8) 310 8 ( 0) 2 2.42e-01 AP-2_CS5(8) 311 8 ( 0) 1 2.42e-01 AP-2_CS6'(8) 316 7 ( 0) 2 6.70e-01 HNF-4_CS(12) 322 9 ( 0) 1 1.58e-01 gamma-IRE_CS'(8) 367 6 ( 0) 2 9.88e-01 uteroglobin_HS-'(8) 376 8 ( 0) 1 4.25e-01 SIF-consensus'(6) 381 6 ( 0) 1 4.26e-01 SIF_core_RS'(6) 381 6 ( 0) 1 2.43e-01 gamma-IRE_CS'(8) 386 6 ( 0) 1 9.88e-01 AP-4/E1247-EGFR(6) 390 6 ( 0) 1 2.43e-01 AP4/E1247_site(6) 390 6 ( 0) 1 2.43e-01 GATA-1-undefine'(9) 393 9 ( 0) 1 4.30e-03 MRE_CS7'(11) 395 8 ( 0) 1 1.83e-02 PuF_RS(7) 395 7 ( 0) 1 6.70e-02 Sp1-YB1'(6) 396 6 ( 0) 1 2.43e-01 MRE_CS2'(7) 399 6 ( 0) 1 4.26e-01 E2A_CS(7) 408 6 ( 0) 1 4.26e-01 MyoD-MCK-right_'(6) 409 6 ( 0) 2 2.43e-01 AP-2_CS5'(8) 416 8 ( 0) 1 2.42e-01 XRE_CS1(6) 419 6 ( 0) 1 4.26e-01 AP-2_CS6'(8) 421 7 ( 0) 1 6.70e-01 AP-2-TBXAS1(6) 424 6 ( 0) 1 2.43e-01 vaccinia-term-s'(6) 428 6 ( 0) 1 2.43e-01 ECI-6/IkappaB-a'(11) 435 8 ( 0) 1 9.13e-03 (Sp1)-U2snR.2(6) 440 6 ( 0) 1 2.43e-01 GKLF-RS'(7) 440 7 ( 0) 1 6.71e-01 GKLF_CS'(7) 440 7 ( 0) 1 6.71e-01 Sp1-CCR1'(6) 440 6 ( 0) 1 2.43e-01 ADD1/SREBP_site'(8) 441 8 ( 0) 2 2.42e-01 CNBP-SRE'(8) 441 8 ( 0) 2 2.42e-01 EGR1-high-affin'(9) 441 8 ( 0) 1 6.67e-02 AP-2_CS6(8) 443 7 ( 0) 1 6.70e-01 GR-MT-IIA(6) 452 6 ( 0) 1 2.43e-01 AP-2-p62_(2)'(8) 455 8 ( 0) 1 1.72e-02 AP-2-TBXAS1'(6) 466 6 ( 0) 1 2.43e-01 gamma-globin-un'(6) 472 6 ( 0) 1 2.43e-01 ADD1/SREBP_site'(8) 485 8 ( 0) 1 2.42e-01 CNBP-SRE'(8) 485 8 ( 0) 1 2.42e-01 MyoD-MCK-right_'(6) 496 6 ( 0) 1 2.43e-01 OBP_RS'(7) 499 7 ( 0) 1 6.70e-02 GCF_CS'(7) 509 7 ( 0) 1 6.71e-01 GKLF-RS(7) 509 7 ( 0) 1 6.71e-01 GKLF_CS(7) 509 7 ( 0) 1 6.71e-01 B1_CS'(12) 513 9 ( 0) 1 3.97e-02 WAP_US6'(6) 522 6 ( 0) 1 2.43e-01 WAP_US6(6) 522 6 ( 0) 1 2.43e-01 erythropoietin-(7) 531 7 ( 0) 1 6.70e-02 GCF_CS(7) 533 7 ( 0) 1 6.71e-01 Sp1-complement_'(7) 535 7 ( 0) 1 6.70e-02 Sp1_CS4(9) 535 9 ( 0) 1 2.41e-01 rat_upstream_4 For sequence /tmp/temp.seq1049984942, length 501 : Site (Length) Position Score (Gaps) Occurrence Exp Value PEA3-uPA(6) 75 6 ( 0) 1 2.15e-01 PEA3_CS(6) 75 6 ( 0) 1 3.84e-01 PEA3_site_(2)'(6) 75 6 ( 0) 1 2.15e-01 IE1.2'(6) 76 6 ( 0) 2 2.15e-01 CAC-bf-HS-40(8) 79 8 ( 0) 1 1.50e-02 NFkB_CS2'(11) 98 8 ( 0) 2 2.54e-01 MHC_class_II_Eb(9) 99 9 ( 0) 1 3.75e-03 NFkB_CS4'(9) 99 8 ( 0) 1 1.13e-01 AP-4/E1247-EGFR'(6) 108 6 ( 0) 1 2.15e-01 AP4/E1247_site'(6) 108 6 ( 0) 1 2.15e-01 WAP_US5'(6) 109 6 ( 0) 1 2.15e-01 CAC-binding-PBG'(7) 113 7 ( 0) 1 5.86e-02 CP2-alphaA-glob(11) 136 8 ( 0) 1 7.95e-03 gamma-IRE_CS'(8) 160 6 ( 0) 2 9.79e-01 Sp1-calpain_(3)'(6) 174 6 ( 0) 1 2.15e-01 BRE'(7) 187 7 ( 0) 3 3.83e-01 MyoD-MCK-right_'(6) 194 6 ( 0) 1 2.15e-01 lambda5-site_F_'(7) 194 7 ( 0) 1 5.86e-02 mTDT-site_F_(4)'(7) 194 7 ( 0) 1 5.86e-02 Lam_B2_US'(11) 195 8 ( 0) 1 3.18e-02 Sp1-YB1'(6) 196 6 ( 0) 2 2.15e-01 GATA-1-undefine'(9) 197 9 ( 0) 1 3.75e-03 PuF_RS(7) 199 7 ( 0) 1 5.86e-02 Sp1-YB1'(6) 200 6 ( 0) 1 2.15e-01 CSS_(2)(7) 203 7 ( 0) 1 5.86e-02 GR-intron-site-'(6) 204 6 ( 0) 1 2.15e-01 ACCC-containing'(8) 210 8 ( 0) 1 1.50e-02 BRE'(7) 215 7 ( 0) 2 3.83e-01 MBF-I_CS(7) 219 7 ( 0) 2 2.15e-01 MRE_CS2(7) 219 6 ( 0) 2 3.83e-01 MBF-I_CS'(7) 220 7 ( 0) 1 2.15e-01 MRE_CS2'(7) 220 6 ( 0) 2 3.83e-01 NRF-1-cytochrom'(12) 221 9 ( 0) 1 2.16e-03 NRF-1_CS(12) 221 9 ( 0) 1 1.73e-02 NRF1_site(12) 221 9 ( 0) 1 1.73e-02 PTF1-consensus(6) 235 6 ( 0) 1 2.15e-01 AP-2_CS5(8) 237 8 ( 0) 1 2.14e-01 LF-A1_CS(6) 246 6 ( 0) 1 6.21e-01 W-element_CS(8) 246 7 ( 0) 1 6.19e-01 E-alpha_H_box'(7) 255 7 ( 0) 1 5.86e-02 TGT3-apoB(6) 255 6 ( 0) 1 2.15e-01 W-element_CS'(8) 255 7 ( 0) 1 6.19e-01 gamma-IRE_CS'(8) 256 6 ( 0) 1 9.79e-01 AP-2-p62_(2)'(8) 260 8 ( 0) 1 1.50e-02 delta_site_(kap(8) 287 7 ( 0) 1 9.06e-307 GM-PBP-1-GM-CSF'(12) 314 9 ( 0) 1 2.16e-03 B1_CS'(12) 318 9 ( 0) 1 3.46e-02 gamma-IRE_CS(8) 326 6 ( 0) 1 9.79e-01 WAP_US6'(6) 327 6 ( 0) 1 2.15e-01 WAP_US6(6) 327 6 ( 0) 1 2.15e-01 erythropoietin-(7) 336 7 ( 0) 1 5.86e-02 GCF_CS(7) 338 7 ( 0) 3 6.20e-01 Sp1-complement_'(7) 340 7 ( 0) 1 5.86e-02 Sp1_CS4(9) 340 9 ( 0) 1 2.14e-01 AP-2_CS6'(8) 382 7 ( 0) 1 6.19e-01 MRE_CS2'(7) 389 6 ( 0) 1 3.83e-01 MREc_(3)'(7) 389 7 ( 0) 1 5.86e-02 GCF_CS'(7) 396 7 ( 0) 2 6.20e-01 GC_box'(7) 397 7 ( 0) 1 3.83e-01 Sp1-IE-3.3'(6) 398 6 ( 0) 1 2.15e-01 Sp1-IE-4/5'(6) 398 6 ( 0) 1 2.15e-01 Sp1-hsp70(6) 398 6 ( 0) 1 2.15e-01 hsp70.2(6) 398 6 ( 0) 1 2.15e-01 SV40.10'(11) 400 8 ( 0) 1 7.95e-03 SV40.4'(11) 400 8 ( 0) 1 7.95e-03 mouse_upstream_4 For sequence /tmp/temp.seq1049984965, length 501 : Site (Length) Position Score (Gaps) Occurrence Exp Value GR-intron-site-(6) 1 6 ( 0) 1 2.15e-01 AP-2_CS6'(8) 6 7 ( 0) 3 6.19e-01 CAC-binding-PBG'(7) 11 7 ( 0) 1 5.86e-02 CP2-alphaA-glob(11) 34 8 ( 0) 1 7.95e-03 gamma-IRE_CS(8) 44 6 ( 0) 1 9.79e-01 LF-A1_CS(6) 51 6 ( 0) 2 6.21e-01 BRE'(7) 85 7 ( 0) 4 3.83e-01 MyoD-MCK-right_'(6) 92 6 ( 0) 1 2.15e-01 lambda5-site_F_'(7) 92 7 ( 0) 1 5.86e-02 mTDT-site_F_(4)'(7) 92 7 ( 0) 1 5.86e-02 Lam_B2_US'(11) 93 8 ( 0) 1 3.18e-02 Sp1-YB1'(6) 94 6 ( 0) 2 2.15e-01 GATA-1-undefine'(9) 95 9 ( 0) 1 3.75e-03 PuF_RS(7) 97 7 ( 0) 1 5.86e-02 Sp1-YB1'(6) 98 6 ( 0) 1 2.15e-01 CSS_(2)(7) 101 7 ( 0) 1 5.86e-02 GR-intron-site-'(6) 102 6 ( 0) 1 2.15e-01 ACCC-containing'(8) 108 8 ( 0) 1 1.50e-02 BRE'(7) 113 7 ( 0) 3 3.83e-01 MBF-I_CS(7) 117 7 ( 0) 2 2.15e-01 MRE_CS2(7) 117 6 ( 0) 2 3.83e-01 MBF-I_CS'(7) 118 7 ( 0) 1 2.15e-01 MRE_CS2'(7) 118 6 ( 0) 2 3.83e-01 NRF-1-cytochrom'(12) 119 9 ( 0) 1 2.16e-03 NRF-1_CS(12) 119 9 ( 0) 1 1.73e-02 NRF1_site(12) 119 9 ( 0) 1 1.73e-02 PTF1-consensus(6) 133 6 ( 0) 1 2.15e-01 LF-A1_CS(6) 144 6 ( 0) 1 6.21e-01 W-element_CS(8) 144 7 ( 0) 1 6.19e-01 Sp1-IE-3.3(6) 148 6 ( 0) 1 2.15e-01 Sp1-IE-4/5(6) 148 6 ( 0) 1 2.15e-01 Sp1-hsp70'(6) 148 6 ( 0) 1 2.15e-01 hsp70.2'(6) 148 6 ( 0) 1 2.15e-01 E-alpha_H_box'(7) 153 7 ( 0) 1 5.86e-02 TGT3-apoB(6) 153 6 ( 0) 1 2.15e-01 W-element_CS'(8) 153 7 ( 0) 1 6.19e-01 gamma-IRE_CS'(8) 154 6 ( 0) 1 9.79e-01 AP-2-p62_(2)'(8) 158 8 ( 0) 1 1.50e-02 delta_site_(kap(8) 185 7 ( 0) 1 -2.17e+307 GM-PBP-1-GM-CSF'(12) 212 9 ( 0) 1 2.16e-03 B1_CS'(12) 216 9 ( 0) 1 3.46e-02 WAP_US6'(6) 225 6 ( 0) 1 2.15e-01 WAP_US6(6) 225 6 ( 0) 1 2.15e-01 GKLF-RS(7) 229 7 ( 0) 1 6.20e-01 GKLF_CS(7) 229 7 ( 0) 1 6.20e-01 BRE'(7) 231 7 ( 0) 2 3.83e-01 erythropoietin-(7) 234 7 ( 0) 1 5.86e-02 GCF_CS(7) 236 7 ( 0) 3 6.20e-01 Sp1-complement_'(7) 238 7 ( 0) 1 5.86e-02 Sp1_CS4(9) 238 9 ( 0) 1 2.14e-01 AP-2_CS6'(8) 280 7 ( 0) 2 6.19e-01 MRE_CS2'(7) 287 6 ( 0) 1 3.83e-01 MREc_(3)'(7) 287 7 ( 0) 1 5.86e-02 GCF_CS'(7) 294 7 ( 0) 2 6.20e-01 GC_box'(7) 295 7 ( 0) 1 3.83e-01 Sp1-IE-3.3'(6) 296 6 ( 0) 1 2.15e-01 Sp1-IE-4/5'(6) 296 6 ( 0) 1 2.15e-01 Sp1-hsp70(6) 296 6 ( 0) 1 2.15e-01 hsp70.2(6) 296 6 ( 0) 1 2.15e-01 SV40.10'(11) 298 8 ( 0) 1 7.95e-03 SV40.4'(11) 298 8 ( 0) 1 7.95e-03 MBF-I_CS(7) 324 7 ( 0) 1 2.15e-01 MRE_CS2(7) 324 6 ( 0) 1 3.83e-01 E2F/DP_consensu'(6) 326 6 ( 0) 3 6.21e-01 E2F/DP_consensu(6) 326 6 ( 0) 3 6.21e-01 E2F/DP_consensu'(6) 328 6 ( 0) 2 6.21e-01 E2F/DP_consensu(6) 328 6 ( 0) 2 6.21e-01