BestFit Results

 BESTFIT of: rat_upstream_5  check: 658  from: 1  to: 500
 
 
 to: mouse_upstream_5  check: 9419  from: 1  to: 554
 

 Symbol comparison table: swgapdna.cmp CompCheck: 2335

         Gap Weight:     50      Average Match: 10.000
      Length Weight:      3   Average Mismatch: -9.000

            Quality:   1728             Length:    200
              Ratio:  8.683               Gaps:      1
 Percent Similarity: 94.472   Percent Identity: 94.472

        Match display thresholds for the alignment(s):
                    | = IDENTITY
                    : =   5
                    . =   1

 rat_upstream_5 x mouse_upstream_5 April 13, 2003 00:11  ..

                  .         .         .         .         .
     302 gagcctggagaacgatgagccgatgcgcgcgcggtgcccagagcccagcc 351
         |||||||||||||||||||||||||||||||||||||||||| |||| ||
       1 gagcctggagaacgatgagccgatgcgcgcgcggtgcccagaacccaacc 50
                  .         .         .         .         .
     352 ctgcccggcgcggctccggaaagccgcccagggaacttagggcaacgcct 401
         ||||||||||||||||||||||||||||| ||||||||||||||||||||
      51 ctgcccggcgcggctccggaaagccgcccggggaacttagggcaacgcct 100
                  .         .         .         .         .
     402 ttgggaccccctactggttggtaggcaggatggtgagctccttgcctctg 451
         |||||||||||||| |||||| |||||||||||||||||||||||||| |
     101 ttgggaccccctaccggttggcaggcaggatggtgagctccttgcctccg 150
                  .         .         .         .         .
     452 ggt.agcggacacctgtgggccgcgtggatgcacaggggatccttgtgga 500
         |||  ||||||||||||||||   |||||| |||||||||||||||||||
     151 ggtcggcggacacctgtgggcactgtggattcacaggggatccttgtgga 200


Input Sequence: rat_upstream_5



!!NA_SEQUENCE 1.0
rat_upstream_5  Length: 500  April 10, 2003 08:38  Type: N  Check: 658  ..

       1  atcccccact tggggcagtc aatgggcaag gattctgggc agagctgaag 

      51  cgggaccagg ctactgttaa gattcgggca ccggcggcgt cccaggtggg 

     101  tgggcacagg gtaggcgtgc gcgcacgcgg ggaatgggag cccgtggacc 

     151  cggcaggtcc tgggcttagt ccctcagaat cacgcctgcc atccagtccc 

     201  aggtatgaaa caggggcact acctctttaa acgcgtccgg ggctgagcct 

     251  ctgccacacc atgtgattgc ttgaaaggcc gggctgggag cgcagcggcg 

     301  ggagcctgga gaacgatgag ccgatgcgcg cgcggtgccc agagcccagc 

     351  cctgcccggc gcggctccgg aaagccgccc agggaactta gggcaacgcc 

     401  tttgggaccc cctactggtt ggtaggcagg atggtgagct ccttgcctct 

     451  gggtagcgga cacctgtggg ccgcgtggat gcacagggga tccttgtgga 







Input Sequence: mouse_upstream_5



!!NA_SEQUENCE 1.0
mouse_upstream_5  Length: 554  April 10, 2003 08:36  Type: N  Check: 9419  ..

       1  gagcctggag aacgatgagc cgatgcgcgc gcggtgccca gaacccaacc 

      51  ctgcccggcg cggctccgga aagccgcccg gggaacttag ggcaacgcct 

     101  ttgggacccc ctaccggttg gcaggcagga tggtgagctc cttgcctccg 

     151  ggtcggcgga cacctgtggg cactgtggat tcacagggga tccttgtgga 

     201  GTAAGTGTAC AGGGAGCCAC CTCACACCTG ATACAAAAAC CAGTGGTGGA 

     251  GTGAGTGCTG CTATTTTAAG TTGCTGAATG GAACCTCTAA GGACAAGGGG 

     301  AGGGGACAGA GGTTAAGCAG ATAGTGAGCC TGAGTGTCTG GCCAGCTTGG 

     351  GCAGGCACTG CATCACTTTA CTGGGGCACA TCTTCGCAGG GCTGCCTATG 

     401  TCCCCCTCCT TCCCAGGCTG GCATCCCCAC CGCAGGCTTC CTGACCACAG 

     451  GTGCTGGCCT CGCGCCCCAG GGCGCCTGTC TGCTGATGTG CCCAGCTCCT 

     501  GCCCACCATG CCGCCGTACA TCTCGGCCTT CCAGGcTGCC TACATTGGCA 

     551  TCGA