!!NA_MULTIPLE_ALIGNMENT 1.0 Multiple Sequence Alignment Results
Symbol comparison table: pileupdna.cmp CompCheck: 6876 GapWeight: 5 GapLengthWeight: 1 human_upstre_pileup_37213.txt MSF: 873 Type: N April 10, 2003 08:40 Check: 5430 .. Name: human_upstream_5 Len: 873 Check: 5109 Weight: 1.00 Name: mouse_upstream_5 Len: 873 Check: 1900 Weight: 1.00 Name: rat_upstream_5 Len: 873 Check: 8421 Weight: 1.00 // 1 50 human_upstre ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ mouse_upstre ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ rat_upstream atcccccact tggggcagtc aatgggcaag gattctgggc agagctgaag 51 100 human_upstre ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ mouse_upstre ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ rat_upstream cgggaccagg ctactgttaa gattcgggca ccggcggcgt cccaggtggg 101 150 human_upstre ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ mouse_upstre ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ rat_upstream tgggcacagg gtaggcgtgc gcgcacgcgg ggaatgggag cccgtggacc 151 200 human_upstre ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ mouse_upstre ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ rat_upstream cggcaggtcc tgggcttagt ccctcagaat cacgcctgcc atccagtccc 201 250 human_upstre ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ mouse_upstre ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ rat_upstream aggtatgaaa caggggcact acctctttaa acgcgtccgg ggctgagcct 251 300 human_upstre ~~~~cgtacc atgtgattgc ttgaaagGCC GGGCTGGGAG CGCTGCGGC. mouse_upstre ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ rat_upstream ctgccacacc atgtgattgc ttgaaaggcc gggctgggag cgcagcggcg 301 350 human_upstre GGGAGCCGGA GGACTATGAG CTGCCGCGCG TTGTCCAGAG CCCAGCCCAG mouse_upstre ~gagcctgga gaacgatgag ccgatgcgcg .cgcggtgcc cagaacccaa rat_upstream ggagcctgga gaacgatgag ccgatgcgcg .cgcggtgcc cagagcccag 351 400 human_upstre CCCTACcGCG CGCGGCCCGG AGCTCTGTTC CCTGGAACTT TGGGCACTGC mouse_upstre ccctgcccgg cgcggctccg gaaagccgcc cggggaactt agggcaacgc rat_upstream ccctgcccgg cgcggctccg gaaagccgcc cagggaactt agggcaacgc 401 450 human_upstre CTCTGGGA.C CCCTGCCGGC CAGCAGGCAG GATGgtgagc tccctgcatc mouse_upstre ctttgggacc ccctaccggt tggcaggcag gatggtgagc tccttgcctc rat_upstream ctttgggacc ccctactggt tggtaggcag gatggtgagc tccttgcctc 451 500 human_upstre ctgttctgtg cacaggggtg ggcagagcca gtcatgggag acccctctgt mouse_upstre cgggtcggcg gacacctgtg ggcactgtgg attcacaggg gatccttgtg rat_upstream tgggt.agcg gacacctgtg ggccgcgtgg atgcacaggg gatccttgtg 501 550 human_upstre gcgtgtgtct gtgtgtgcgc gcgcgctggg agctgcctca cacctgataa mouse_upstre gaGTAAGT.. .......... ..GTACAGGG AGCCACCTCA CACCTGATAC rat_upstream ga~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 551 600 human_upstre aaaagccagt ggaggagtga gcgctgctat tttaagttgc tgaatggaac mouse_upstre AAAAACCAGT GGTGGAGTGA GTGCTGCTAT TTTAAGTTGC TGAATGGAAC rat_upstream ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 650 human_upstre ctctgggaat gataaaggga agggacaaag attaggcaga ga.agggtcc mouse_upstre CTCT...AAG GACAAGGGGA GGGGACAGAG GTTAAGCAGA TAGTGAGCCT rat_upstream ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 651 700 human_upstre gggtgcccct ccagcctggg taggagctgc atgtgacaag tgggacacat mouse_upstre GAGTGTCTGG CCAGCTTGGG CAGGCACTGC ATCACTTTAC TGGGGCACAT rat_upstream ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 701 750 human_upstre cacagggtac ctggagttcc agggcagcct gagctccctg cccctcccag mouse_upstre CTTCGCAGGG CTGCCTATGT CCCCCTCCTT CCCAGGCTGG CATCCCCACC rat_upstream ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 751 800 human_upstre acgggtctcc ccatcccag. .gcttccctg accacacag~ ~~~~~~~~~~ mouse_upstre GCAGGCTTCC TGACCACAGG TGCTGGCCTC GCGCCCCAGG GCGCCTGTCT rat_upstream ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 801 850 human_upstre ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ mouse_upstre GCTGATGTGC CCAGCTCCTG CCCACCATGC CGCCGTACAT CTCGGCCTTC rat_upstream ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 851 873 human_upstre ~~~~~~~~~~ ~~~~~~~~~~ ~~~ mouse_upstre CAGGcTGCCT ACATTGGCAT CGA rat_upstream ~~~~~~~~~~ ~~~~~~~~~~ ~~~