BestFit Results

 BESTFIT of: human_upstream_5  check: 4877  from: 1  to: 530
 
 
 to: mouse_upstream_5  check: 9419  from: 1  to: 554
 

 Symbol comparison table: swgapdna.cmp CompCheck: 2335

         Gap Weight:     50      Average Match: 10.000
      Length Weight:      3   Average Mismatch: -9.000

            Quality:   1621             Length:    484
              Ratio:  3.643               Gaps:     11
 Percent Similarity: 75.114   Percent Identity: 75.114

        Match display thresholds for the alignment(s):
                    | = IDENTITY
                    : =   5
                    . =   1

 human_upstream_5 x mouse_upstream_5 April 13, 2003 00:08  ..

                  .         .         .         .         .
      51 CCGGAGGACTATGAGCTG....CCGCGCGTTGTCCAGAGCCCAGCCCAGC 96
         | |||| || |||||| |     |||||| || ||||| |||| ||| ||
       5 ctggagaacgatgagccgatgcgcgcgcggtgcccagaacccaaccctgc 54
                  .         .         .         .         .
      97 CCTACcGCGCGCGGCCCGGAGCTCTGTTCCCTGGAACTTTGGGCACTGCC 146
         ||      ||||||| | |         ||  ||||||| |||||  |||
      55 cc.....ggcgcggctccggaaagccgcccggggaacttagggcaacgcc 99
                  .         .         .         .         .
     147 TCTGGGA.CCCCTGCCGGCCAGCAGGCAGGATGgtgagctccctgcatcc 195
         | ||||| ||||| ||||   ||||||||||||||||||||| ||| |||
     100 tttgggaccccctaccggttggcaggcaggatggtgagctccttgcctcc 149
                  .         .         .         .         .
     196 tgttctgtgcacaggggtgggcagag.ccagtcatgggagacccctctgt 244
          | || | | |||   |||||||  |   | |||  || || || | || 
     150 gggtcggcggacacctgtgggcactgtggattcacaggggatccttgtg. 198
                  .         .         .         .         .
     245 gcgtgtgtctgtgtgtgcgcgcgcgctgggagctgcctcacacctgataa 294
             | ||  ||||           | ||||||  |||||||||||||| 
     199 ....gaGTAAGTGT..........ACAGGGAGCCACCTCACACCTGATAC 234
                  .         .         .         .         .
     295 aaaagccagtggaggagtgagcgctgctattttaagttgctgaatggaac 344
         |||| ||||||| |||||||| ||||||||||||||||||||||||||||
     235 AAAAACCAGTGGTGGAGTGAGTGCTGCTATTTTAAGTTGCTGAATGGAAC 284
                  .         .         .         .         .
     345 ctctgggaatgataaagggaagggacaaagattaggcagaga.agggtcc 393
         ||||   || || || |||| |||||| || ||| ||||| |  | | | 
     285 CTCT...AAGGACAAGGGGAGGGGACAGAGGTTAAGCAGATAGTGAGCCT 331
                  .         .         .         .         .
     394 gggtgcccctccagcctgggtaggagctgcatgtgacaagtgggacacat 443
         | ||| |   ||||| |||| |||  ||||||      | |||| |||||
     332 GAGTGTCTGGCCAGCTTGGGCAGGCACTGCATCACTTTACTGGGGCACAT 381
                  .         .         .         .         .
     444 cacagggtacctggagttccagggcagcctgagctccctgcccctcccag 493
         |               |  |||||| |||| |  ||||   || ||||||
     382 C..............TTCGCAGGGCTGCCT.ATGTCCCCCTCCTTCCCAG 416
                  .         .         .    
     494 acgggtctccccatcccaggcttccctgaccaca 527
          | ||  |||||| | ||||||| ||||||||||
     417 GCTGGCATCCCCACCGCAGGCTT.CCTGACCACA 449


Input Sequence: human_upstream_5



!!NA_SEQUENCE 1.0
human_upstream_5  Length: 530  April 10, 2003 09:03  Type: N  Check: 4877  ..

       1  cgtaccatgt gattgcttga aagGCCGGGC TGGGAGCGCT GCGGCGGGAG 

      51  CCGGAGGACT ATGAGCTGCC GCGCGTTGTC CAGAGCCCAG CCCAGCCCTA 

     101  CcGCGCGCGG CCCGGAGCTC TGTTCCCTGG AACTTTGGGC ACTGCCTCTG 

     151  GGACCCCTGC CGGCCAGCAG GCAGGATGgt gagctccctg catcctgttc 

     201  tgtgcacagg ggtgggcaga gccagtcatg ggagacccct ctgtgcgtgt 

     251  gtctgtgtgt gcgcgcgcgc tgggagctgc ctcacacctg ataaaaaagc 

     301  cagtggagga gtgagcgctg ctattttaag ttgctgaatg gaacctctgg 

     351  gaatgataaa gggaagggac aaagattagg cagagaaggg tccgggtgcc 

     401  cctccagcct gggtaggagc tgcatgtgac aagtgggaca catcacaggg 

     451  tacctggagt tccagggcag cctgagctcc ctgcccctcc cagacgggtc 

     501  tccccatccc aggcttccct gaccacacag 







Input Sequence: mouse_upstream_5



!!NA_SEQUENCE 1.0
mouse_upstream_5  Length: 554  April 10, 2003 08:36  Type: N  Check: 9419  ..

       1  gagcctggag aacgatgagc cgatgcgcgc gcggtgccca gaacccaacc 

      51  ctgcccggcg cggctccgga aagccgcccg gggaacttag ggcaacgcct 

     101  ttgggacccc ctaccggttg gcaggcagga tggtgagctc cttgcctccg 

     151  ggtcggcgga cacctgtggg cactgtggat tcacagggga tccttgtgga 

     201  GTAAGTGTAC AGGGAGCCAC CTCACACCTG ATACAAAAAC CAGTGGTGGA 

     251  GTGAGTGCTG CTATTTTAAG TTGCTGAATG GAACCTCTAA GGACAAGGGG 

     301  AGGGGACAGA GGTTAAGCAG ATAGTGAGCC TGAGTGTCTG GCCAGCTTGG 

     351  GCAGGCACTG CATCACTTTA CTGGGGCACA TCTTCGCAGG GCTGCCTATG 

     401  TCCCCCTCCT TCCCAGGCTG GCATCCCCAC CGCAGGCTTC CTGACCACAG 

     451  GTGCTGGCCT CGCGCCCCAG GGCGCCTGTC TGCTGATGTG CCCAGCTCCT 

     501  GCCCACCATG CCGCCGTACA TCTCGGCCTT CCAGGcTGCC TACATTGGCA 

     551  TCGA