BestFit Results

 BESTFIT of: human_upstream_5  check: 4877  from: 1  to: 530
 
 
 to: rat_upstream_5  check: 658  from: 1  to: 500
 

 Symbol comparison table: swgapdna.cmp CompCheck: 2335

         Gap Weight:     50      Average Match: 10.000
      Length Weight:      3   Average Mismatch: -9.000

            Quality:    981             Length:    197
              Ratio:  5.136               Gaps:      4
 Percent Similarity: 81.720   Percent Identity: 81.720

        Match display thresholds for the alignment(s):
                    | = IDENTITY
                    : =   5
                    . =   1

 human_upstream_5 x rat_upstream_5 April 13, 2003 00:09  ..

                  .         .         .         .         .
       4 accatgtgattgcttgaaagGCCGGGCTGGGAGCGCTGCGGCGGGAGCC. 52
         |||||||||||||||||||||||||||||||||||| |||||||||||| 
     258 accatgtgattgcttgaaaggccgggctgggagcgcagcggcgggagcct 307
                  .         .         .         .         .
      53 GGAGGACTATGAGCTG....CCGCGCGTTGTCCAGAGCCCAGCCCAGCCC 98
         |||| || |||||| |     |||||| || |||||||||||||| ||||
     308 ggagaacgatgagccgatgcgcgcgcggtgcccagagcccagccctgccc 357
                  .         .         .         .         .
      99 TACcGCGCGCGGCCCGGAGCTCTGTTCCCTGGAACTTTGGGCACTGCCTC 148
               ||||||| | |         ||  ||||||| |||||  |||| 
     358 .....ggcgcggctccggaaagccgcccagggaacttagggcaacgcctt 402
                  .         .         .         .       
     149 TGGGA.CCCCTGCCGGCCAGCAGGCAGGATGgtgagctccctgcatc 194
         ||||| ||||| | ||   | ||||||||||||||||||| ||| ||
     403 tgggaccccctactggttggtaggcaggatggtgagctccttgcctc 449


Input Sequence: human_upstream_5



!!NA_SEQUENCE 1.0
human_upstream_5  Length: 530  April 10, 2003 09:03  Type: N  Check: 4877  ..

       1  cgtaccatgt gattgcttga aagGCCGGGC TGGGAGCGCT GCGGCGGGAG 

      51  CCGGAGGACT ATGAGCTGCC GCGCGTTGTC CAGAGCCCAG CCCAGCCCTA 

     101  CcGCGCGCGG CCCGGAGCTC TGTTCCCTGG AACTTTGGGC ACTGCCTCTG 

     151  GGACCCCTGC CGGCCAGCAG GCAGGATGgt gagctccctg catcctgttc 

     201  tgtgcacagg ggtgggcaga gccagtcatg ggagacccct ctgtgcgtgt 

     251  gtctgtgtgt gcgcgcgcgc tgggagctgc ctcacacctg ataaaaaagc 

     301  cagtggagga gtgagcgctg ctattttaag ttgctgaatg gaacctctgg 

     351  gaatgataaa gggaagggac aaagattagg cagagaaggg tccgggtgcc 

     401  cctccagcct gggtaggagc tgcatgtgac aagtgggaca catcacaggg 

     451  tacctggagt tccagggcag cctgagctcc ctgcccctcc cagacgggtc 

     501  tccccatccc aggcttccct gaccacacag 







Input Sequence: rat_upstream_5



!!NA_SEQUENCE 1.0
rat_upstream_5  Length: 500  April 10, 2003 08:38  Type: N  Check: 658  ..

       1  atcccccact tggggcagtc aatgggcaag gattctgggc agagctgaag 

      51  cgggaccagg ctactgttaa gattcgggca ccggcggcgt cccaggtggg 

     101  tgggcacagg gtaggcgtgc gcgcacgcgg ggaatgggag cccgtggacc 

     151  cggcaggtcc tgggcttagt ccctcagaat cacgcctgcc atccagtccc 

     201  aggtatgaaa caggggcact acctctttaa acgcgtccgg ggctgagcct 

     251  ctgccacacc atgtgattgc ttgaaaggcc gggctgggag cgcagcggcg 

     301  ggagcctgga gaacgatgag ccgatgcgcg cgcggtgccc agagcccagc 

     351  cctgcccggc gcggctccgg aaagccgccc agggaactta gggcaacgcc 

     401  tttgggaccc cctactggtt ggtaggcagg atggtgagct ccttgcctct 

     451  gggtagcgga cacctgtggg ccgcgtggat gcacagggga tccttgtgga