!!NA_MULTIPLE_ALIGNMENT 1.0 Multiple Sequence Alignment Results
Symbol comparison table: pileupdna.cmp CompCheck: 6876 GapWeight: 5 GapLengthWeight: 1 human_promot_pileup_163162.txt MSF: 2101 Type: N April 14, 2003 16:34 Check: 4814 .. Name: mouse_promotersab2 Len: 2101 Check: 3167 Weight: 1.00 Name: rat_promotersab Len: 2101 Check: 5106 Weight: 1.00 Name: human_promotersab Len: 2101 Check: 6541 Weight: 1.00 // 1 50 mouse_promot ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ rat_promoter ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ human_promot gggttgtggc tagctaacat tggggtcccc agcctgactc tctttgcctt 51 100 mouse_promot ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ rat_promoter ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ human_promot cctagaaccc ttgcccaata cccacaaaca aggatttctc aggttgggat 101 150 mouse_promot ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ rat_promoter ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ human_promot ctctgcgagg catccatcca tgtccagggt ctggtcatta gttaatatca 151 200 mouse_promot ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ rat_promoter ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ human_promot gtggactgcc taaaccgaaa ctggcagaag gtggccaggg gaggggtctg 201 250 mouse_promot ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ rat_promoter ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ human_promot gacccagtgg agagagtcag gagcctggga ttcttatttt ggtcctgtta 251 300 mouse_promot ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ rat_promoter ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ human_promot ggatttgccc tgtgaccctc cggaagtccc ttgcttccct gagcctgctt 301 350 mouse_promot ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ rat_promoter ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ human_promot ctttatctgt aacatgaggg gattggactg gatgccttat ggcttagcgc 351 400 mouse_promot ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ rat_promoter ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ human_promot tgtgctatga agaggaagaa ggaggaagga aaaggagcgc agagcgggtt 401 450 mouse_promot ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ rat_promoter ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ human_promot acactgccag gagatcctgg gaagctaggt cacttccctg agcctcagca 451 500 mouse_promot ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ rat_promoter ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ human_promot tccttatctg caaaatagaa attgctaata gactaaaagg caattctgaa 501 550 mouse_promot ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ rat_promoter ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ human_promot agatggatga gaaaggaata taatgactca gggtagagcc tgcaaaacaa 551 600 mouse_promot ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ rat_promoter ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ human_promot tatgggatga gaagatgcag ggactggttt catggagaga gcagggtttt 601 650 mouse_promot ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ rat_promoter ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ human_promot aggattgggg gagggtgcca gggctaccga ctgctttggg agatcccaga 651 700 mouse_promot ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ rat_promoter ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ human_promot gggggcattc tgaagtcctg cagaagagat gctgtgccgt gaggggtgag 701 750 mouse_promot ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ rat_promoter ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ human_promot gggtcgctgg aggccagacc agggctccca ggagtcctgc attgagaagg 751 800 mouse_promot ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ rat_promoter ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ human_promot gagagagtgg acacaggaag gatgcgcctc tgtccagtcc tgaggctggg 801 850 mouse_promot ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ rat_promoter ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ human_promot cgcacacacc aggcccttcg aaaagctcac attttttcca gcttttctca 851 900 mouse_promot ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ cgacgaggga rat_promoter ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ human_promot cccagtatca cttcctttgt taagaggagg gggtggggga ggagacggag 901 950 mouse_promot ggggcccgcg ggtgccgccg ccgcccccgc ccccgccccc tccccctccc rat_promoter ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~nc ctccctctcc human_promot gatgaggagg gaggggctgg cgggtgccgc cgccgccccc gccccctccc 951 1000 mouse_promot ggtgtgcgga gcccgattgt cactcagctc ccgcgccggg ggcgacgaag rat_promoter ggtgtgcgga gcccgattgt cactcagctc ccgcgccggg ggcgacgaag human_promot ggtgtgcgga gcccgattgt cactcagctc ctgcgccggg ggcgacagag 1001 1050 mouse_promot gcgccggcgc cagagtggag tctcggctgg ctacca.ccc cttggacata rat_promoter gcgcgggcgc cagagtggag tctcggctgg ctacca.ccc cctggaccta human_promot ccgcaggcgc ccgagtcgag tcccagccag ctaccatccc tctggagctt 1051 1100 mouse_promot actggctagc cctgggttcc cctggcatcc tctgagggag cgactgccca rat_promoter actgggtaac cctgggttcc cctggcatcc tctgagtgag cgactgccca human_promot accggccggc cttggcttcc ccagGAATCC CTGGAGCTAG CGGCTGCTGA 1101 1150 mouse_promot aggttttgag gtctggggat acttggctag acagttcagg tggccaggcg rat_promoter aggtttcgag gtctagggat acttggctag actgttcagg tggccaggag human_promot AGGCGTCGAG GTGTGGGGGC ACTTGGACAG AACAGTCAGG CAGCCGGGAG 1151 1200 mouse_promot ctctgccagc tttggtgtga ccttgggtaa gtctgtggct cagttc.... rat_promoter ctctgccagc tttggtgtga ccttgggtaa gtctgtggct cagttc.... human_promot CTCTGCCAGC TTTG..GTGA CCTTGGgtaa gtctgagtct cggttcaccc 1201 1250 mouse_promot ......gtgc atcatgagtg tgcaggaaag gggtggatga aatgactggg rat_promoter ......gtgc accacgaatg tgcaggaaag gggtggatga aacgactggg human_promot ctggggctcc ccaatggggg tgcaggagag ggttgaaaga agagaccgga 1251 1300 mouse_promot gtgtccccct tggggcagtc gatgggtaag gattctgggc agagctggag rat_promoter atcccccact tggggcagtc aatgggcaag gattctgggc agagctgaag human_promot atg.ccccct tggggcaggc catgggcaag gttccccgac agagctggaa 1301 1350 mouse_promot ctggaccagg cttctgttaa gaatcgggca ccagcggcgt cccaggtggg rat_promoter cgggaccagg ctactgttaa gattcgggca ccggcggcgt cccaggtggg human_promot cgggaccaga ggactgctaa gatccaggca ccagacgggt ctcaagtggg 1351 1400 mouse_promot tgggcacagg gtaggcgtgc gcgcacgcgg ggaatgggag ccggtggacc rat_promoter tgggcacagg gtaggcgtgc gcgcacgcgg ggaatgggag cccgtggacc human_promot tgggcgcagg gcaggtgcgg gcacgc.tgg ggaataggga gaaacgcccc 1401 1450 mouse_promot cgccaggtcc tgggcttagt ccctcagaat cacgcctgcc atccagtccc rat_promoter cggcaggtcc tgggcttagt ccctcagaat cacgcctgcc atccagtccc human_promot agccttgtcc tgggctccgt ccccagaccc acgtctgcca ccccagtccc 1451 1500 mouse_promot aggtacgaaa caggggcact acctctttaa aggcgtccgg ggctgagcct rat_promoter aggtatgaaa caggggcact acctctttaa acgcgtccgg ggctgagcct human_promot aggtgcgaaa caggggcgct acctctttaa aagcgtccgg ggctgagtct 1501 1550 mouse_promot ctgccacacc atgtgattgc ttgaaaggcc gggctgggag cgcagcggcg rat_promoter ctgccacacc atgtgattgc ttgaaaggcc gggctgggag cgcagcggcg human_promot ctgccgtacc atgtgattgc ttgaaag~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1551 1600 mouse_promot ggagcctgga gaacgatgag ccgatgcgcg cgcggtgccc agaacccaac rat_promoter ggagcctgga gaacgatgag ccgatgcgcg cgcggtgccc agagcccagc human_promot ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1601 1650 mouse_promot cctgcccggc gcggctccgg aaagccgccc ggggaactta gggcaacgcc rat_promoter cctgcccggc gcggctccgg aaagccgccc agggaactta gggcaacgcC human_promot ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1651 1700 mouse_promot tttgggaccc cctaccggtt ggcaggcagg atggtgagct ccttgcctcc rat_promoter TTTGGGACCC CCTACTGGTT GGTAGGCAGG ATGGTGAGCT CCTTGCCTCT human_promot ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1701 1750 mouse_promot gggtcggcgg acacctgtgg gcactgtgga ttcacagggg atccttgtgg rat_promoter GGGT.AGCGG ACACCTGTGG GCCGCGTGGA TGCACAGGGG ATCCTTGTGG human_promot ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1751 1800 mouse_promot aGTAAGTGTA CAGGGAGCCA CCTCACACCT GATACAAAAA CCAGTGGTGG rat_promoter AGTAAGTGTA CTGGGAGCCA CCTCACACCT GATACAAAAG CCAGTGGTGG human_promot ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 1850 mouse_promot AGTGAGTGCT GCTATTTTAA GTTGCTGAAT GGAACCTCTA AGGACAAGGG rat_promoter AGTGAGTGCT GCTATTTTAA GTTGCTGAAT GGAACCTCTA AGGACAAGGG human_promot ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1851 1900 mouse_promot GAGGGGACAG AGGTTAAGCA GATAGTGAGC CTGAGTGTCT GGCCAGCTTG rat_promoter GAGGGGACAG AGGTTAAGCA GATAGTGAGC CTGAGTGCTG CCAGGGGCTG human_promot ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1901 1950 mouse_promot GGCAGGCACT GCATCACTTT ACTGGGGCAC ATCTTCGCAG GGCTGCCTAT rat_promoter GCCAGGCACT GCATCCGTTT ACTGGGGCAC ATCTTCGCAG GGCTGCCTAT human_promot ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1951 2000 mouse_promot GTCCCCCTCC TTCCCAGGCT GGCATCCCCA CCGCAGGCTT CCTGACCACA rat_promoter GTTCCCCTCC TTCCCAGGCT GGCATCCCCA CCGCAGGCTT CCTGACCACA human_promot ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2001 2050 mouse_promot GGTGCTGGCC TCGCGCCCCA GGGCGCCTGT CTGCTGATGT GCCCAGCTCC rat_promoter ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ human_promot ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2051 2100 mouse_promot TGCCCACCAT GCCGCCGTAC ATCTCGGCCT TCCAGGCTGC CTACATTGGC rat_promoter ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ human_promot ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 mouse_promot A rat_promoter ~ human_promot ~