!!NA_MULTIPLE_ALIGNMENT 1.0 Multiple Sequence Alignment Results
Symbol comparison table: pileupdna.cmp CompCheck: 6876 GapWeight: 5 GapLengthWeight: 1 fragment_hum_pileup_149872.txt MSF: 827 Type: N April 14, 2003 09:38 Check: 6101 .. Name: fragment_human_up3 Len: 827 Check: 6527 Weight: 1.00 Name: mouse_upst_3 Len: 827 Check: 3829 Weight: 1.00 Name: rat_upst_3 Len: 827 Check: 5745 Weight: 1.00 // 1 50 fragment_hum ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ mouse_upst_3 cttcagtgtg ttagtctttg gcaagttcct ttcatttccc agcctgaatc rat_upst_3 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 51 100 fragment_hum ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ mouse_upst_3 tttttctgga gcacaaggga ttggactaga tactgtgtag tcttaggtgc rat_upst_3 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 101 150 fragment_hum ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ mouse_upst_3 tggggcagaa aggagaagga gaaggaggag gagggggagg ggaaggagca rat_upst_3 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 151 200 fragment_hum ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~tcc mouse_upst_3 tagtagtgta acactgacag tgggggtcat ttctctgagc ctcagcatcc rat_upst_3 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 201 250 fragment_hum ttatctgcaa aatagaaatt gctaatagac taaaaggcaa ttctgaaaga mouse_upst_3 tcatctgcaa aatggaaatt acgaagagcc tgaaaagc.a ctctgagcga rat_upst_3 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~atgtat tcgtcgaaca 251 300 fragment_hum tggatgagaa aggaatataa tgactcaggg tagagcctgc aaaacaatat mouse_upst_3 tggatgagaa agggct...a tgactcagga gactgcctgc aaagtaacgt rat_upst_3 tcgtcttata tttgaacaaa tgtacgtgaa tgccccctaa gttatatact 301 350 fragment_hum gggatgagaa gatgcaggga ctggtttcat ggagagagca gggttttagg mouse_upst_3 gtgtgcggga agcctgtgcg ctcctgacag tgctgggact gctttcctga rat_upst_3 aataaatgag tctttgggct gtatgtcgta tgtaccctta ggttttct~~ 351 400 fragment_hum attgggggag ggtgccaggg ctaccgactg ctttgggaga tcccagaggg mouse_upst_3 agagagtagg ttttaagatt aggggaggcg cccagatgcc aatggttggt rat_upst_3 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 401 450 fragment_hum ggcattctga agtcctgcag aagagatgct gtgccgtgag gggtgagggg mouse_upst_3 ggcggtggga gaccagagag gggccctctt gagtcccgca ggtgattagg rat_upst_3 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 451 500 fragment_hum tcgctggagg ccagaccagg gctcccagga gtcctgcatt gagaagggag mouse_upst_3 gcttgggctg tccgcctgct gcattgagaa gggagggagg gagtaaggga rat_upst_3 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 501 550 fragment_hum agagtggaca caggaaggat gcgcctctgt ......ccag tcctgaggct mouse_upst_3 aagagggaac acgggaatcg gcacctcggt actgtccctg tcccgaggcc rat_upst_3 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 551 600 fragment_hum gggcgcacac accaggccct tcgaaaagct cacatttttt ccagcttttc mouse_upst_3 ggatccatac atcacaccat tcgagacgct cac.gttttc ccagcttttc rat_upst_3 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 650 fragment_hum tcacccagta tcacttcctt tgttaagagg agggggtggg ggaggagacg mouse_upst_3 tcacactgaa tcacttcctt tgtttagagg agggggtagg ggaggagacg rat_upst_3 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 651 700 fragment_hum gaggatgagg agggaggggc tggcgggtgc cgccgccgcc cccgccccct mouse_upst_3 gagggcgacg agggaggggc ccgcgggtgc cgccgccgcc cccgcccccg rat_upst_3 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 701 750 fragment_hum cccggtgtgc ggagcccgat tgtcactcag ctcctgcgcc gggggcgaca mouse_upst_3 ccccc~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ rat_upst_3 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 751 800 fragment_hum gagccgcagg cgcccgagtc gagtcccagc cagctaccat ccctctggag mouse_upst_3 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ rat_upst_3 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 801 827 fragment_hum cttaccggcc ggccttggct tccccag mouse_upst_3 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~ rat_upst_3 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~