Comparison of possible upstream promoter elements that determine alternative splicing in human, rat, and mouse A1 adenosine receptors


Adrienne J. Williams, Nguyen D. Khoa, Dave Delano, Bruce N. Cronstein.
New York University School of Medicine, New York, NY
APPENDIX
Appendix A
The dual promoter region of human A1 adenosine receptor
> Figure 1 (expanded)

Appendix B
BLAST sequences of A1AR mRNA exons across species
> a1rdnaseq5> a1rdnaseq2

Appendix C
BLAST sequences of A1AR mRNA exons across species
> a1rdnaseq10> a1rdnaseq
> a1rdnaseq4

Appendix D
Total PILEUP alignment of A1AR exons
> AB_001089_pileup.htm

Appendix E
Sequences of A1AR dual AB promoters
> abpromoters

Appendix F
Sequences of A1AR  promoters upstream exons 3, 4, and 5
> upstream-promoters

Appendix G
PILEUP alignment upstream of A1AR exon 3
> fragment_hum_pileup_149872.htm

Appendix H
PILEUP alignment upstream of A1AR exon 4
> human_upstre_pileup_37541.htm

Appendix I
GAP and BESTFIT alignment upstream A1AR exon 4
> rat_upstream_gap_119005.htm
> human_upstre_gap_118747.htm
> human_upstre_gap_118785.htm
> rat_upstream_bestfi_119230.htm
> human_upstre_bestfi_119158.htm
> human_upstre_bestfi_114017.htm

Appendix J
PILEUP alignment upstream A1AR exon 5
> human_upstre_pileup_37213.htm
Appendix K
GAP and BESTFIT alignment upstream A1AR exon 5
> rat_upstream_gap_119005.htm
> human_upstre_gap_118747.htm
> human_upstre_gap_118785.htm
> rat_upstream_bestfi_119230.htm
> human_upstre_bestfi_119158.htm
> human_upstre_bestfi_114017.htm

Appendix L
PILEUP alignment of A1AR dual promoter regions
> human_promot_pileup_163612.htm
> Figure 2 (A expanded, B expanded)

Appendix M
Sequences of A1AR upstream promoters with alignment homology across species
> upstream_promoters aligned  
> abpromotersaligned

Appendix N
Promoter start sites upstream A1AR exons 3, 4, and 5
> neuralnetworkdataaligned
> neuralnetworkdata

Appendix O
Promoter start sites upstream the A1AR AB region
> neuralnetworkdataab

Appendix P
Upstream promoter elements for A1AR exon 4
> tfsitescandata4> human4
> mouse4   > rat4

Appendix Q
Upstream promoter elements for A1AR exon 5
> tfsitescandata> human5
> mouse5 > rat5

Appendix R
Upstream promoter elements for A1AR unaligned exon 3
> tfsitescandata3> human3
> mouse3   > rat3

Appendix S
Upstream promoter elements for A1AR dual promoter region
> tfsitescandataab> humanab
> mouseab   > ratab
> Figure 3 (A expanded, B expanded, C expanded)

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